Ragon Institute

Gaiha Lab

T cells, Vaccines, Immune Control

Lab Overview

The overarching goal of the Gaiha Lab is to translate insights from successful human T cell responses into effective T cell-based vaccines for infectious disease and cancer.

The Gaiha Lab is working to establish a T cell vaccine platform that incorporates target epitope identification, HLA-epitope stability assessments, T cell immunogen design, viral vector production, and iterative testing in small animal models. We work with a structure-based network analysis technology, which integrates network theory with protein structure data to define topologically important and mutationally constrained regions of viral proteins. We utilized this approach to identify key targets of CD8+ T cells in individuals who spontaneously control HIV (Gaiha et al., Science 2019) and, more recently, identify mutation-resistant epitopes in SARS-CoV-2 (Nathan, Rossin, et al., 2021). The overarching goal is to integrate these technologies towards developing prophylactic and therapeutic vaccines for HIV and SARS-CoV-2 and ultimately for broad translation to infectious diseases and cancer.

Lab WebsiteBoston Globe Recognition

Gaurav D. Gaiha, MD, DPhil

Principal Investigator

Affiliation

  • Principle Investigator, Ragon Institute of Mass General, MIT, and Harvard
  • Associate Professor, Harvard School of Medicine

About

Dr. Gaiha received his D.Phil in Biochemistry from Oxford University as a Clarendon Scholar and his MD magna cum laude from the Health Sciences and Technology (HST) program at Harvard Medical School and MIT. He trained in Internal Medicine and Gastroenterology at MGH before completing his post-doctoral research fellowship at the Ragon Institute.

Recognition & Honors

  • Awarded the NIAID New Innovators DP2 Award
  • Recognized as a Gilead HIV Research Scholar
  • Named a Burroughs Wellcome Career Award for Medical Scientists
  • Awarded the CHAVD (NIH) and CAVD (Gates Foundation) New Investigator Awards
  • Awarded the NIDA Avant-Garde DP1 Award
  • Awarded the Howard M. Goodman Fellowship

Related Research Foci

  • Artificial Intelligence and Machine Learning
  • Cancer Immunology
  • Computational Science
  • Fundamental Immunology
  • Global Health
  • Mucosal Immunology
  • FRESH
  • Infectious Disease Pathogenesis
  • Immune Monitoring
View All +

Related Areas of Study

  • Hepatitis
  • Human papillomavirus
  • HIV
  • Infectious Disease
  • Coronaviruses
  • Epstein-Barr virus
  • Cancer
  • Colon cancer
  • Monkeypox
View All +

Looking for Collaboration?

Contact Us

Selected Publications

Deep learning enhances the prediction of HLA class I-presented CD8+ T cell epitopes in foreign pathogens

Jeremy Wohlwend, Anusha Nathan, Nitan Shalon, Charles R Crain, Rhoda Tano-Menka, Benjamin Goldberg, Emma Richards, Gaurav D Gaiha , Regina Barzilay

Nat Mach Intell. 2025;7(2):232-243

T cell reactivity to the SARS-CoV-2 Omicron variant is preserved in most but not all individuals

Naranbhai V, Nathan A, Kaseke C, Berrios C, Khatri A, Choi S, Getz MA, Tano-Menka R, Ofoman O, Gayton A, Senjobe F, Zhao Z, St Denis KJ, Lam EC, Carrington M, Garcia-Beltran WF, Balazs AB, Walker BD, Iafrate AJ, Gaiha GD

Cell, 185(6), 2022

Structure-guided T cell vaccine design for SARS-CoV-2 variants and sarbecoviruses

Nathan A, Rossin EJ, Kaseke C, Park RJ, Khatri A, Koundakjian D, Urbach JM, Singh NK, Bashirova A, Tano-Menka R, Senjobe F, Waring MT, Piechocka-Trocha A, Garcia-Beltran WF, Iafrate AJ, Naranbhai V, Carrington M, Walker BD, Gaiha GD

Cell, 184(17), 2021

T cell responses to SARS-CoV-2 infection and vaccination are elevated in B cell deficiency and reduce risk of severe COVID-19

Reza Zonozi, Lucy C Walters, Aaron Shulkin, Vivek Naranbhai, Pravarut Nithagon, Gabriel Sauvage, Clarety Kaeske, Katherine Cosgrove, Anusha Nathan, Rhoda Tano-Menka, Alton C Gayton , Matthew A Getz, Fernando Senjobe, Daniel Worrall , A John Iafrate , Caroline Fromson, Sydney B Montesi , Deepak A Rao, Jeffrey A Sparks , Zachary S Wallace, Jocelyn R Farmer, Bruce D Walker , Richelle C Charles, Karen Laliberte, John L Niles, Gaurav D Gaiha

Sci Transl Med . 2023 Nov 29;15(724):eadh4529

Structural topology defines protective CD8+ T cell epitopes in the HIV proteome

Gaiha GD, Rossin EJ, Urbach J, Landeros C, Collins DR, Nwonu C, Muzhingi I, Anahtar MN, Waring OM, Piechocka-Trocha A, Waring M, Worrall DP, Ghebremichael MS, Newman RM, Power KA, Allen TM, Chodosh J, Walker BD

Science, 2019. 364, 480-484

Lab Team

Ming Tao

Lab Manager

Zhe Hu

Postdoctoral Fellow

Aljawharah Alrubayyi

Postdoctoral Fellow

Matt Getz

Postdoctoral Fellow

Charlie Crain

Research Technician I

Alton Gayton

Graduate Student

Anusha Nathan

Graduate Student

Fernando Senjobe

Graduate Student

Esther Jeon

Research Technician

Hsinyen Huang

Research Technician

Subeksha Ravi

Research Technician

Sam Maldonado

Postdoctoral Fellow

Aarthi Vijayakumar

MD Student

Ryan Yim

Research Technician

Anna Traunbauer

Graduate Student

Luis A. Montalvo Riveira

Research Technician

Amir W. Ledbetter

Research Technician

Emma Richards

Research Technician

Matthew Yarnall

Graduate Student

Laura Schmidt-Hong

Graduate Student

Ghada Abdallah

Project Coordinator

Looking for Collaboration?

(857) 268-7016

[email protected]

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